Team:St Pauls London/Parts

From 2013hs.igem.org

(Difference between revisions)
(Operon 3)
 
(36 intermediate revisions not shown)
Line 39: Line 39:
                 display: none;
                 display: none;
         }
         }
-
 
-
#internet-explorer {
 
-
margin-top: 0px;
 
-
text-align: center;
 
-
color: #C30;
 
-
font-family: monospace;
 
-
font-weight: bold;
 
-
}
 
-
 
/*----- HEADER -----*/
/*----- HEADER -----*/
Line 54: Line 45:
height: 150px;
height: 150px;
}
}
-
 
+
-
       
+
#headerTitle {
#headerTitle {
text-align: right;
text-align: right;
Line 108: Line 98:
color: #F93;
color: #F93;
text-decoration: underline;
text-decoration: underline;
-
}
+
}    
-
 
+
-
         a.no-decoration {
+
         a.mobile-link, a.mobile-link:hover, a.mobile-link:active {
-
                text-decoration: none;
+
                 text-decoration:none;
-
                color: inherit;
+
-
        }
+
-
 
+
-
        #first {
+
-
                margin-left: 0px;
+
-
        }
+
-
 
+
-
        #second {
+
-
                 margin-left: -17px;
+
-
        }
+
-
 
+
-
        #third {
+
-
                margin-right: -10px;
+
-
                margin-left: -15px;
+
-
        }
+
-
 
+
-
        #fourth {
+
-
                margin-left: -5px;
+
         }
         }
Line 152: Line 124:
         }
         }
-
         ul.drop-down li.top-of-list {
+
        div.drop-down-top {
 +
                background-color: transparent;
 +
                margin-bottom: -7px;
 +
        }
 +
 
 +
        ul.drop-down:hover div.drop-down-top {
 +
                background-color: #EAEAEA;
 +
        }
 +
 
 +
         ul.drop-down li.top-of-list { /*----- makes sure top item is always shown -----*/
                 display: block;
                 display: block;
-
                background-color: transparent;
 
-
                color: black;
 
-
                text-decoration: none;
 
         }
         }
                
                
Line 165: Line 143:
         ul.drop-down:hover li.top-of-list {
         ul.drop-down:hover li.top-of-list {
                 color: #F93;
                 color: #F93;
-
text-decoration: underline;
+
text-decoration: underline;            
         }
         }
Line 171: Line 149:
/*----- MAIN CONTENT -----*/
/*----- MAIN CONTENT -----*/
-
 
-
        .indent-content {
 
-
                margin-left: 25px;
 
-
        }
 
-
 
-
        .pdf {
 
-
                text-align: center;
 
-
        }
 
.title-link, .title-link:active, .title-link:visited {
.title-link, .title-link:active, .title-link:visited {
Line 222: Line 192:
   </div>
   </div>
   </div>
   </div>
-
    <!--[if gte IE 2 ]>
 
-
<p id="internet-explorer">This Wiki is designed for best use on <a href="https://www.google.com/intl/en_uk/chrome/browser/?hl=en-GB">Google Chrome</a> and <a href="https://www.mozilla.org/en-US/firefox/fx/#desktop">Mozilla Firefox</a>. Some features may not available to your browser.</p>
 
-
    <![endif]-->
 
</html>
</html>
Line 232: Line 199:
<html>
<html>
-
   <ul class="drop-down" id="first">
+
   <ul class="drop-down">
 +
  <div class="drop-down-top">
   <li class="top-of-list">
   <li class="top-of-list">
     <a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London">
     <a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London">
Line 240: Line 208:
HOME
HOME
<html>
<html>
-
   </p></div></a></li></ul>
+
   </p></div></a></li></div></ul>
</html>
</html>
|
|
<html>
<html>
-
   <ul class="drop-down" id="second">
+
   <ul class="drop-down">
-
   <li class="top-of-list">
+
  <div class="drop-down-top">
 +
   <li class="top-of-list"> 
 +
    <a class="mobile-link" href="">
     <div class="nav_button">
     <div class="nav_button">
     <p class="nav_buttonText">
     <p class="nav_buttonText">
Line 251: Line 221:
PROJECT
PROJECT
<html>
<html>
-
   </p></li></div>
+
   </p></div></a></li></div>
</html>
</html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Abstract"></html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Abstract"></html>
 +
----
ABSTRACT
ABSTRACT
----
----
Line 272: Line 243:
|
|
<html>
<html>
-
   <ul class="drop-down" id="third">
+
   <ul class="drop-down">
 +
  <div class="drop-down-top">
   <li class="top-of-list">
   <li class="top-of-list">
 +
    <a class="mobile-link" href="">
     <div class="nav_button">
     <div class="nav_button">
     <p class="nav_buttonText">
     <p class="nav_buttonText">
Line 279: Line 252:
THE TEAM
THE TEAM
<html>
<html>
-
   </li></p></div>
+
   </p></div></a></li></div>
</html>
</html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Participants"></html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Participants"></html>
 +
----
PARTICIPANTS
PARTICIPANTS
----
----
Line 292: Line 266:
|
|
<html>
<html>
-
   <ul class="drop-down" id="fourth">
+
   <ul class="drop-down">
 +
  <div class="drop-down-top">
   <li class="top-of-list">
   <li class="top-of-list">
 +
    <a style="text-decoration: none" href="">
     <div class="nav_button">
     <div class="nav_button">
     <p class="nav_buttonText">
     <p class="nav_buttonText">
Line 299: Line 275:
OTHER
OTHER
<html>
<html>
-
   </li></p></div>
+
   </p></div></a></li></div>
</html>
</html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Notebook"></html>
<html><div class="drop-down"><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Notebook"></html>
 +
----
NOTEBOOK
NOTEBOOK
----
----
Line 311: Line 288:
<html><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Safety"></html>
<html><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Safety"></html>
SAFETY
SAFETY
 +
----
 +
<html></a></li></html>
 +
<html><li><a class="nav_buttonLink" href="https://2013hs.igem.org/Team:St_Pauls_London/Attributions"></html>
 +
ATTRIBUTIONS
----
----
<html></a></li></html>
<html></a></li></html>
Line 328: Line 309:
</html>
</html>
 +
====Circuits====
-
 
+
======Operon 1======
-
=====Operon 1=====
+
<center>
<center>
<html>
<html>
Line 337: Line 318:
</center>
</center>
-
=====Operon 2=====
+
======Operon 2======
<center>
<center>
<html>
<html>
Line 344: Line 325:
</center>
</center>
-
=====Operon 3=====
+
======Operon 3======
<center>
<center>
<html>
<html>
-
   <img src="https://static.igem.org/mediawiki/2013hs/4/4d/Operon_3.png"/>
+
   <img src="https://static.igem.org/mediawiki/2013hs/2/2e/Operon_3_new.png"/>
</html>
</html>
</center>
</center>
 +
====Parts====
 +
 +
In our notebook and on our procedures sheet, we refer to parts by letter. The main reason for applying arbitrary letter coded to all parts was to facilitate labelling of plates and tubes. We have included a table (below) with the full BioBrick equivalent of each letter-coded part, as well as its function. This may help other teams looking at our circuits and procedures better understand which parts perform which function.
 +
 +
<center>
 +
 +
{|class="wikitable" style="text-align: center"
 +
!colspan="6" | PARTS
 +
 +
|-
 +
|colspan="2" style="font-weight: bold"|Operon
 +
|style="font-weight: bold"|Letter Code
 +
|style="font-weight: bold"|BioBrick Reference
 +
|style="font-weight: bold"|Function
 +
|style="font-weight: bold"|Length (bp)
 +
|-
 +
|colspan="2" rowspan="3"|2
 +
|J
 +
|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K091104 BBa_K091104]
 +
|Promoter
 +
|87
 +
|-
 +
|K
 +
|[http://partsregistry.org/Part:BBa_B0034 BBa_B0034]
 +
|RBS
 +
|12
 +
|-
 +
|L
 +
|[http://partsregistry.org/Part:BBa_E0030 BBa_E0030]
 +
|YFP gene
 +
|723
 +
|-
 +
|2
 +
|3
 +
|C
 +
|[http://partsregistry.org/Part:BBa_C0040 BBa_C0040]
 +
|TetR gene
 +
|685
 +
|-
 +
|2
 +
|3
 +
|F
 +
|[http://partsregistry.org/Part:BBa_B0015 BBa_B0015]
 +
|Terminator
 +
|129
 +
|-
 +
|colspan="2" rowspan="4"|3
 +
|A
 +
|[http://partsregistry.org/wiki/index.php?title=Part:BBa_K418003 BBa_K418003]
 +
|Promoter
 +
|1416
 +
|-
 +
|B
 +
|[http://partsregistry.org/Part:BBa_B0033 BBa_B0033]
 +
|RBS
 +
|11
 +
|-
 +
|D
 +
|[http://partsregistry.org/Part:BBa_C0072 BBa_C0072]
 +
|mnt gene
 +
|313
 +
|-
 +
|E
 +
|[http://partsregistry.org/wiki/index.php?title=Part:BBa_E1010 BBa_E1010]
 +
|RFP gene
 +
|706
 +
|}
 +
</center>
 +
 +
====Backbones====
 +
 +
<center>
 +
 +
{|class="wikitable" style="text-align: center"
 +
 +
|-
 +
|style="font-weight: bold"|Backbone
 +
|style="font-weight: bold"|Length (bp)
 +
|-
 +
|Ampicillin-Resistant
 +
|2155
 +
|-
 +
|Kanamycin-Resistant
 +
|2204
 +
|-
 +
|Chloramphenicol-Resistant
 +
|2070
 +
|-
 +
|Tetracycline-Resistant
 +
|2461
 +
|-
 +
|Ampicillin- & Kanamycin-Resistant
 +
|3189
 +
|-
 +
|}
 +
 +
</center>
<html></div></html>
<html></div></html>

Latest revision as of 19:28, 19 June 2013

Contents

Parts

Circuits

Operon 1

Operon 2

Operon 3

Parts

In our notebook and on our procedures sheet, we refer to parts by letter. The main reason for applying arbitrary letter coded to all parts was to facilitate labelling of plates and tubes. We have included a table (below) with the full BioBrick equivalent of each letter-coded part, as well as its function. This may help other teams looking at our circuits and procedures better understand which parts perform which function.

PARTS
Operon Letter Code BioBrick Reference Function Length (bp)
2 J [http://partsregistry.org/wiki/index.php?title=Part:BBa_K091104 BBa_K091104] Promoter 87
K [http://partsregistry.org/Part:BBa_B0034 BBa_B0034] RBS 12
L [http://partsregistry.org/Part:BBa_E0030 BBa_E0030] YFP gene 723
2 3 C [http://partsregistry.org/Part:BBa_C0040 BBa_C0040] TetR gene 685
2 3 F [http://partsregistry.org/Part:BBa_B0015 BBa_B0015] Terminator 129
3 A [http://partsregistry.org/wiki/index.php?title=Part:BBa_K418003 BBa_K418003] Promoter 1416
B [http://partsregistry.org/Part:BBa_B0033 BBa_B0033] RBS 11
D [http://partsregistry.org/Part:BBa_C0072 BBa_C0072] mnt gene 313
E [http://partsregistry.org/wiki/index.php?title=Part:BBa_E1010 BBa_E1010] RFP gene 706

Backbones

Backbone Length (bp)
Ampicillin-Resistant 2155
Kanamycin-Resistant 2204
Chloramphenicol-Resistant 2070
Tetracycline-Resistant 2461
Ampicillin- & Kanamycin-Resistant 3189