Team:Beijing HDFLS High/Project

From 2013hs.igem.org

(Difference between revisions)
(Enzyme digestion after ligation)
(DNA Sequencing and Submitting Part)
 
(20 intermediate revisions not shown)
Line 6: Line 6:
[[Image:Generator.JPG|center|800px]]
[[Image:Generator.JPG|center|800px]]
===INTRODUCTION===
===INTRODUCTION===
-
We designed a biological system in ''E.coli'' to detect extensive UV irradiation. If the toolkit is under extensive UV irradiation, it will produce a wintergreen odor.Then, This special odor will warn people of the UV irradiation. In order to increase the attraction of our product, we make ''E.coli'' culture medium with the different color using red, yellow and blue pigments.<br><br>
+
We designed a biological system using ''E.coli'' to detect extensive UV irradiation. If the toolkit is under extensive UV irradiation, it will produce a wintergreen odor.Then, This special odor will warn people of the UV irradiation. In order to increase the attraction of our product, we make ''E.coli'' culture medium with the different color using red, yellow and blue pigments.<br><br>
-
[[Image:Outlook.jpg|400px|]]
+
[[Image:Outlook.jpg||Center||400px|]]<Br>
-
 
+
<br>
-
Ultraviolet (UV) light is the spectrum consists of electromagnetic waves with frequencies higher than those that humans identify as the color violet. These frequencies are invisible to humans, but visible to a number of insects and birds.<br>
+
<br>
 +
Ultraviolet (UV) light is part of the electromagnetic spectrum having waves with frequencies higher than those that humans can identify as the color violet. These frequencies are invisible to humans, but visible to a number of insects and birds.<br>
   
   
UVC
UVC
Line 20: Line 21:
Even longer waves that can penetrate deep into the skin’s surface ,releasing free radicals and causing DNA changes that can result in skin cancers.<br>
Even longer waves that can penetrate deep into the skin’s surface ,releasing free radicals and causing DNA changes that can result in skin cancers.<br>
-
[[File:uv.jpg|800px|]]<br>Recently, because the ozone layer has been destroying by some artificial chemical substances like CFC (Freon),the increase of UV irradiation appears on the earth.
+
[[File:uv.jpg||center||800px|]]
-
[[Image:Beijing_HDFLS_High_ESA.jpg|800px|]] <br>Extensive UV irradiation is harmful to human being, such as  
+
<br>Recently, because the ozone layer has been destroying by some artificial chemical substances like CFC (Freon),the increase of UV irradiation appears on the earth.
-
* 1) Weaken the immune system of human
+
[[Image:Beijing_HDFLS_High_ESA.jpg||center|||800px|]]  
-
* 2) Increase the risk of skin cancer, cataracts
+
<br>
-
* 3) Make a heavy damage in genes
+
Extensive UV irradiation is harmful to human being, such as  
-
[[Image:Shanghai.JPG|800px|]]
+
* 1) Weakening of the immune system  
 +
* 2) Increased risk of skin cancer, cataracts
 +
* 3) Causing heavy damage to genes
== PARTS==
== PARTS==
[[Image:1.jpg|center|700px]]
[[Image:1.jpg|center|700px]]
-
===Part A:BBa_J22106 rec A (SOS) Promoter ===
+
<br>
 +
Extensive UV irradiation impings on heavily DNA damage and results in a single-strand DNA occuring, which activates RecA protein.Then,RecA protein leads to the expression of about 15 different repair proteins to rescue DNA damage.RecA protein is the central regulator in SOS repair system.Rec A (SOS) Promoter is available in 2004 registry part plate.
[[Image:3.jpg|center|700px]]
[[Image:3.jpg|center|700px]]
-
Extensive UV irradiation impings on heavily DNA damage and results in a single-strand DNA occuring, which activates RecA protein.Then,RecA protein leads to the expression of about 20 different repair proteins to rescue DNA damage.RecA protein is the central regulator in SOS repair system.Rec A (SOS) Promoter is available in 2004 registry part plate.
 
-
 
-
===Part B:BBa_J45119 Wintergreen odor enzyme (BwMST1) generator===
 
-
[[Image:2.jpg|center|700px]]
 
BBa_J45119 takes as input a transcriptional signal (PoPS) and produce as output the BMST1 enzyme that catalyzes production of methyl salicylate from salicylic acid. Methyl salicylate has a wintergreen smell. Wintergreen odor enzyme (BMST1) generator is availabe in 2005 registry part plate.
BBa_J45119 takes as input a transcriptional signal (PoPS) and produce as output the BMST1 enzyme that catalyzes production of methyl salicylate from salicylic acid. Methyl salicylate has a wintergreen smell. Wintergreen odor enzyme (BMST1) generator is availabe in 2005 registry part plate.
 +
[[Image:4.jpg|center|700px]]
== RESULTS ==
== RESULTS ==
Line 55: Line 56:
<br>
<br>
-
=== Enzyme digestion of Part A and Part B ===
+
=== Resriction digest of Part A and Part B ===
[[Image:Digestion.jpg|center|500px]]
[[Image:Digestion.jpg|center|500px]]
[[Image:PARTAandB.JPG|center|500px]]
[[Image:PARTAandB.JPG|center|500px]]
-
 
=== Growing After Ligation ===
=== Growing After Ligation ===
 +
[[Image:ligation.jpg|center|310px]]
 +
<br>
 +
[[Image:lala.jpg|center|310px]]
[[Image:lala.jpg|center|310px]]
-
=== Enzyme digestion after ligation ===
+
=== Restriction digest after ligation ===
-
[[Image:AB.png|center|900px]]
+
[[Image:AB.png|center|800px]]
[[Image:PARTAB.JPG|center|500px]]
[[Image:PARTAB.JPG|center|500px]]
-
[[Image:BASES.JPG|center|500px]]
+
=== DNA Sequencing and Submitting Part===
 +
http://parts.igem.org/Part:BBa_K994000
 +
[[Image:Bases.jpg|center|800px]]
== STEP==
== STEP==
Line 77: Line 82:
(Make sure we have enough copies of BBa_J22106 and BBa_J45119.)
(Make sure we have enough copies of BBa_J22106 and BBa_J45119.)
[[Image:Growing.jpg|center|600px]]
[[Image:Growing.jpg|center|600px]]
-
=== STEP2: MINIPREP ===
+
=== STEP2: Plamid MINIPREP ===
-
[[Image:Plasmid.jpg|center|600px]]
+
[[Image:PLASMID.jpg|center|600px]]
 +
 
=== STEP3:RESTRICTION DIGEST ===
=== STEP3:RESTRICTION DIGEST ===
[[Image:Qiyue.JPG|center|600px]]
[[Image:Qiyue.JPG|center|600px]]

Latest revision as of 03:42, 22 June 2013

Contents

TITLE: The UV-responsive Wintergreen Odor Generator

ABSTRACT

The UV-responsive wintergreen odor generator catalyzes the conversion of the precursor salicylic acid to the wintergreen odor methyl salicylate under extensive UV irradiation. The biosynthetic device is composed of two transcriptional devices: Rec A (SOS) promoter (BBa_J22106) and a wintergreen odor enzyme generator (BBa_J45119). The odor generator takes as input extensive UV irradiation and produce as output an enzyme that catalyzes production of an odor from a chemical precursor.

Generator.JPG

INTRODUCTION

We designed a biological system using E.coli to detect extensive UV irradiation. If the toolkit is under extensive UV irradiation, it will produce a wintergreen odor.Then, This special odor will warn people of the UV irradiation. In order to increase the attraction of our product, we make E.coli culture medium with the different color using red, yellow and blue pigments.

Outlook.jpg


Ultraviolet (UV) light is part of the electromagnetic spectrum having waves with frequencies higher than those that humans can identify as the color violet. These frequencies are invisible to humans, but visible to a number of insects and birds.

UVC The shortest one of UV rays ,usually do not penetrate the Earth’s ozone layer.
UVB Longer waves that reach skin’s surface – can cause surface tanning burning ,and signs of aging.
UVA Even longer waves that can penetrate deep into the skin’s surface ,releasing free radicals and causing DNA changes that can result in skin cancers.

Uv.jpg


Recently, because the ozone layer has been destroying by some artificial chemical substances like CFC (Freon),the increase of UV irradiation appears on the earth.

Beijing HDFLS High ESA.jpg


Extensive UV irradiation is harmful to human being, such as

  • 1) Weakening of the immune system
  • 2) Increased risk of skin cancer, cataracts
  • 3) Causing heavy damage to genes

PARTS

1.jpg


Extensive UV irradiation impings on heavily DNA damage and results in a single-strand DNA occuring, which activates RecA protein.Then,RecA protein leads to the expression of about 15 different repair proteins to rescue DNA damage.RecA protein is the central regulator in SOS repair system.Rec A (SOS) Promoter is available in 2004 registry part plate.

3.jpg

BBa_J45119 takes as input a transcriptional signal (PoPS) and produce as output the BMST1 enzyme that catalyzes production of methyl salicylate from salicylic acid. Methyl salicylate has a wintergreen smell. Wintergreen odor enzyme (BMST1) generator is availabe in 2005 registry part plate.

4.jpg

RESULTS

Growing Part A and Part B

After Growing Part A                                                                                                After Growing Part B

浩泽菌落1.jpg
浩泽菌落2.jpg



















Resriction digest of Part A and Part B

Digestion.jpg


PARTAandB.JPG

Growing After Ligation

Ligation.jpg


Lala.jpg

Restriction digest after ligation

AB.png


PARTAB.JPG

DNA Sequencing and Submitting Part

http://parts.igem.org/Part:BBa_K994000

Bases.jpg

STEP

STEP1: TRANSFORMATION AND GROWING

(Make sure we have enough copies of BBa_J22106 and BBa_J45119.)

Growing.jpg

STEP2: Plamid MINIPREP

STEP3:RESTRICTION DIGEST

Qiyue.JPG


20130518 102210.jpg

STEP4:LIGATION

Menxuyang.jpg

STEP5:TRANSFORMATION

STEP6:MINIPREP

STEP7:RESTRICTION DIGEST

STEP8:DNA SEQUENCING

STEP9:UV INDUCTION

STEP10:DESGIN AND COMPLETE

Progect3.jpg