Team:CIDEB-UANL Mexico/Software-Machine'sOverview
From 2013hs.igem.org
Software
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The Machine's Overview
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Our project’s aim is to develop a system or tool that can automate the process of experimentation with our project. A machine which would enable the user to regulate the temperature of E-Coli, in order to produce the Vip3Ca3 and transport it in different containers while keeping the rate of the bacterium’s population controlled.
This project has the aim as described before, to produce Vip3Ca3 while regulating the growth and production of the bacteria’s population. It's machine that helps with experiments. This is achieved using the following designed system:
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Look at the following graph.
Source: http://www.ugr.es/~eianez/Microbiologia/12crecimiento.htm /td> |
You may notice the growth line going down when time extends too much. This happens during a long time lapse, which we mentioned at the beginning. Bacteria’s will die after a long time lapse. We should at least, produce Vip3Ca3 before these events take place.
That’s where the resistors and heat sinks come in. We power the resistors to produce heat, and we power the fans, or heat sinks to dissipate heat, this way, we alter the line of growth. But, if we turn them on, how do you know when to turn them off? How are we going to control that? We can control it using temperature sensor probes, which are waterproof thus protecting them from water and allowing us to receive a sharper and more precise lecture. The data received from this sensors, is related to temperature. |
Yet, this doesn't tell us how we are controlling the temperature. Even with sensors and outputs (resistors and heat sinks) we can’t do much. We need something that can manipulate all the data, and that’s where the micro-controller comes into play.
The micro-controller used in this project, isn't rather just the micro-controller itself, but a board with it. In other words, we are talking about an built open source board, with an Atmel micro-controller. The Arduino board, in this case, the Mega ADK to be more specific. The main option was using an Arduino UNO itself, but since the Mega was already at our reach, we decided to go with it. This allows us to connect in a prototype like way, all of the output devices, or inputs, and manipulate them trough the means of code! The code used to program Arduino, Is based on Processing and is written in Java. It has functionality similar to C/C++. With this in mind, we can program our board in order to control the whole system by receiving and responding to the environment, that is. We will also add interactivity to this board, through the means of an interface. Next comes into play an array of UV LEDs. We know that our E. coli population will be producing Vip3Ca3 at temperatures ranging along 20˚C or low. It’s in these moments when the GFP reporter is produced alongside with Vip3Ca3. The GFP reporter when exposed to ultraviolet radiation emits a green glow. Thus logically, if the glow is there, we can infer that Vip3Ca3 is being produced, and the experiment is a success. In other words, we need to expose the solution to a wavelength similar of ultraviolet rays. The UV LEDs we mentioned before, emit a wavelength of an approximate 400 nm which should be enough, to expose the green glow in the solution. But in case the wavelength wasn't enough to expose the glow, and it wasn't fully observable from the eye. Then it would mean trouble for us. That’s where the spectrometer comes into play. This device is simple and handmade, using a simple box and a CD. We should observe differences in the spectrometer, by comparing and observing both containers with it. One without Vip3Ca3, and the other one with it. |
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CIDEB UANL Team. Centro de Investigación y Desarrollo de Educación Bilingüe |
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